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ID	175	NAME	Odorranain-V1   Blast NCBI-PROT
LENGTH	12	DISULFIDE BRIDGE			View PDB REMARK YASARA ************************************************************* REMARK YASARA * * REMARK YASARA * Y A S A R A * REMARK YASARA * * REMARK YASARA * Yet Another Scientific Artificial Reality Application * REMARK YASARA * * REMARK YASARA * MOLECULE STRUCTURE FILE, PDB FORMAT * REMARK YASARA * * REMARK YASARA * Just use YASARA every day to make your questions go away! * REMARK YASARA * * REMARK YASARA * www.YASARA.org * REMARK YASARA * * REMARK YASARA ************************************************************* REMARK YASARA REMARK YASARA Original filename: C:\Users\federica\Favorites\Dropbox\lab13\Lucia\pdb_yadamp\risultati_grimd_abalone\pdb_final\GLLSGTSVRGSI.pdb REMARK YASARA Written on: Wed May 14 15:37:19 2014 REMARK YASARA Number of models: 1 REMARK YASARA Number of atoms: 168 REMARK YASARA Please address questions or suggestions to: Eliza@yasara.org REMARK YASARA SEQRES 1 12 GLY LEU LEU SER GLY THR SER VAL ARG GLY SER ILE ATOM 1 N GLY 1 -12.572 -18.430 24.927 1.00 -0.42 N ATOM 2 1H GLY 1 -13.099 -18.058 24.148 1.00 -0.42 H ATOM 3 2H GLY 1 -12.744 -19.422 25.008 1.00 -0.42 H ATOM 4 3H GLY 1 -12.865 -17.966 25.775 1.00 0.27 H ATOM 5 CA GLY 1 -11.123 -18.188 24.702 1.00 -0.03 C ATOM 6 1HA GLY 1 -10.555 -18.571 25.550 1.00 0.07 H ATOM 7 2HA GLY 1 -10.813 -18.705 23.795 1.00 0.07 H ATOM 8 C GLY 1 -10.853 -16.715 24.545 1.00 0.60 C ATOM 9 O GLY 1 -11.786 -16.015 24.199 1.00 -0.57 O ATOM 10 N LEU 2 -9.640 -16.232 24.790 1.00 -0.42 N ATOM 11 H LEU 2 -8.880 -16.852 25.037 1.00 0.27 H ATOM 12 CA LEU 2 -9.346 -14.790 24.786 1.00 -0.05 C ATOM 13 HA LEU 2 -10.166 -14.262 25.278 1.00 0.09 H ATOM 14 C LEU 2 -9.198 -14.163 23.392 1.00 0.60 C ATOM 15 O LEU 2 -8.944 -12.972 23.267 1.00 -0.57 O ATOM 16 CB LEU 2 -8.059 -14.516 25.586 1.00 -0.11 C ATOM 17 1HB LEU 2 -7.295 -15.219 25.256 1.00 0.05 H ATOM 18 2HB LEU 2 -7.713 -13.524 25.302 1.00 0.05 H ATOM 19 CG LEU 2 -8.092 -14.513 27.126 1.00 0.35 C ATOM 20 HG LEU 2 -8.868 -13.819 27.446 1.00 -0.04 H ATOM 21 CD1 LEU 2 -8.375 -15.874 27.775 1.00 -0.41 C ATOM 22 1HD1 LEU 2 -9.379 -16.202 27.525 1.00 0.10 H ATOM 23 2HD1 LEU 2 -7.639 -16.609 27.450 1.00 0.10 H ATOM 24 3HD1 LEU 2 -8.315 -15.774 28.862 1.00 0.10 H ATOM 25 CD2 LEU 2 -6.751 -13.993 27.640 1.00 -0.41 C ATOM 26 1HD2 LEU 2 -5.939 -14.657 27.342 1.00 0.10 H ATOM 27 2HD2 LEU 2 -6.562 -12.994 27.243 1.00 0.10 H ATOM 28 3HD2 LEU 2 -6.773 -13.924 28.729 1.00 0.10 H ATOM 29 N LEU 3 -9.383 -14.956 22.344 1.00 -0.42 N ATOM 30 H LEU 3 -9.650 -15.909 22.497 1.00 0.27 H ATOM 31 CA LEU 3 -9.215 -14.498 20.960 1.00 -0.05 C ATOM 32 HA LEU 3 -8.178 -14.192 20.821 1.00 0.09 H ATOM 33 C LEU 3 -10.096 -13.300 20.599 1.00 0.60 C ATOM 34 O LEU 3 -9.706 -12.451 19.806 1.00 -0.57 O ATOM 35 CB LEU 3 -9.522 -15.665 20.012 1.00 -0.11 C ATOM 36 1HB LEU 3 -8.921 -16.518 20.326 1.00 0.05 H ATOM 37 2HB LEU 3 -10.571 -15.930 20.145 1.00 0.05 H ATOM 38 CG LEU 3 -9.287 -15.454 18.504 1.00 0.35 C ATOM 39 HG LEU 3 -9.893 -14.614 18.170 1.00 -0.04 H ATOM 40 CD1 LEU 3 -7.825 -15.162 18.168 1.00 -0.41 C ATOM 41 1HD1 LEU 3 -7.181 -15.973 18.510 1.00 0.10 H ATOM 42 2HD1 LEU 3 -7.715 -15.050 17.088 1.00 0.10 H ATOM 43 3HD1 LEU 3 -7.515 -14.227 18.633 1.00 0.10 H ATOM 44 CD2 LEU 3 -9.746 -16.697 17.747 1.00 -0.41 C ATOM 45 1HD2 LEU 3 -10.801 -16.886 17.943 1.00 0.10 H ATOM 46 2HD2 LEU 3 -9.624 -16.532 16.675 1.00 0.10 H ATOM 47 3HD2 LEU 3 -9.156 -17.566 18.040 1.00 0.10 H ATOM 48 N SER 4 -11.244 -13.176 21.248 1.00 -0.42 N ATOM 49 H SER 4 -11.516 -13.859 21.941 1.00 0.27 H ATOM 50 CA SER 4 -12.146 -12.043 21.056 1.00 -0.03 C ATOM 51 HA SER 4 -12.475 -12.007 20.016 1.00 0.08 H ATOM 52 C SER 4 -11.526 -10.689 21.402 1.00 0.60 C ATOM 53 O SER 4 -11.981 -9.656 20.916 1.00 -0.57 O ATOM 54 CB SER 4 -13.353 -12.282 21.955 1.00 0.21 C ATOM 55 1HB SER 4 -13.689 -11.336 22.381 1.00 0.04 H ATOM 56 2HB SER 4 -14.158 -12.727 21.369 1.00 0.04 H ATOM 57 OG SER 4 -12.969 -13.184 22.986 1.00 -0.65 O ATOM 58 HG SER 4 -13.688 -13.234 23.625 1.00 0.43 H ATOM 59 N GLY 5 -10.447 -10.680 22.176 1.00 -0.42 N ATOM 60 H GLY 5 -10.069 -11.552 22.538 1.00 0.27 H ATOM 61 CA GLY 5 -9.756 -9.441 22.496 1.00 -0.03 C ATOM 62 1HA GLY 5 -10.471 -8.740 22.928 1.00 0.07 H ATOM 63 2HA GLY 5 -8.982 -9.647 23.234 1.00 0.07 H ATOM 64 C GLY 5 -9.116 -8.776 21.291 1.00 0.60 C ATOM 65 O GLY 5 -8.841 -7.582 21.318 1.00 -0.57 O ATOM 66 N THR 6 -8.943 -9.503 20.194 1.00 -0.42 N ATOM 67 H THR 6 -9.215 -10.481 20.185 1.00 0.27 H ATOM 68 CA THR 6 -8.397 -8.924 18.963 1.00 -0.04 C ATOM 69 HA THR 6 -7.471 -8.400 19.195 1.00 0.10 H ATOM 70 C THR 6 -9.345 -7.915 18.318 1.00 0.60 C ATOM 71 O THR 6 -8.924 -7.115 17.489 1.00 -0.57 O ATOM 72 CB THR 6 -8.102 -10.007 17.904 1.00 0.37 C ATOM 73 HB THR 6 -7.783 -9.526 16.979 1.00 0.00 H ATOM 74 OG1 THR 6 -9.287 -10.770 17.664 1.00 -0.68 O ATOM 75 HG1 THR 6 -9.353 -11.465 18.335 1.00 0.41 H ATOM 76 CG2 THR 6 -7.012 -10.969 18.364 1.00 -0.24 C ATOM 77 1HG2 THR 6 -6.841 -11.707 17.580 1.00 0.06 H ATOM 78 2HG2 THR 6 -6.087 -10.420 18.540 1.00 0.06 H ATOM 79 3HG2 THR 6 -7.310 -11.482 19.277 1.00 0.06 H ATOM 80 N SER 7 -10.598 -7.877 18.755 1.00 -0.42 N ATOM 81 H SER 7 -10.894 -8.525 19.473 1.00 0.27 H ATOM 82 CA SER 7 -11.586 -6.937 18.220 1.00 -0.03 C ATOM 83 HA SER 7 -11.718 -7.140 17.158 1.00 0.08 H ATOM 84 C SER 7 -11.188 -5.468 18.361 1.00 0.60 C ATOM 85 O SER 7 -11.632 -4.632 17.580 1.00 -0.57 O ATOM 86 CB SER 7 -12.930 -7.132 18.920 1.00 0.21 C ATOM 87 1HB SER 7 -12.836 -6.841 19.967 1.00 0.04 H ATOM 88 2HB SER 7 -13.678 -6.500 18.442 1.00 0.04 H ATOM 89 OG SER 7 -13.343 -8.487 18.853 1.00 -0.65 O ATOM 90 HG SER 7 -12.940 -8.968 19.593 1.00 0.43 H ATOM 91 N VAL 8 -10.289 -5.153 19.287 1.00 -0.42 N ATOM 92 H VAL 8 -9.905 -5.878 19.880 1.00 0.27 H ATOM 93 CA VAL 8 -9.815 -3.777 19.465 1.00 -0.09 C ATOM 94 HA VAL 8 -10.689 -3.135 19.577 1.00 0.10 H ATOM 95 C VAL 8 -9.026 -3.237 18.268 1.00 0.60 C ATOM 96 O VAL 8 -8.845 -2.030 18.142 1.00 -0.57 O ATOM 97 CB VAL 8 -8.945 -3.628 20.748 1.00 0.30 C ATOM 98 HB VAL 8 -8.701 -2.574 20.873 1.00 -0.03 H ATOM 99 CG1 VAL 8 -9.734 -4.083 21.986 1.00 -0.32 C ATOM 100 1HG1 VAL 8 -9.163 -3.847 22.884 1.00 0.08 H ATOM 101 2HG1 VAL 8 -10.687 -3.555 22.033 1.00 0.08 H ATOM 102 3HG1 VAL 8 -9.914 -5.158 21.960 1.00 0.08 H ATOM 103 CG2 VAL 8 -7.621 -4.414 20.647 1.00 -0.32 C ATOM 104 1HG2 VAL 8 -7.073 -4.326 21.586 1.00 0.08 H ATOM 105 2HG2 VAL 8 -7.807 -5.467 20.446 1.00 0.08 H ATOM 106 3HG2 VAL 8 -7.002 -3.997 19.852 1.00 0.08 H ATOM 107 N ARG 9 -8.585 -4.112 17.370 1.00 -0.35 N ATOM 108 H ARG 9 -8.740 -5.107 17.524 1.00 0.28 H ATOM 109 CA ARG 9 -7.913 -3.697 16.134 1.00 -0.26 C ATOM 110 HA ARG 9 -7.920 -2.609 16.067 1.00 0.16 H ATOM 111 C ARG 9 -8.647 -4.233 14.913 1.00 0.73 C ATOM 112 O ARG 9 -8.133 -4.137 13.809 1.00 -0.59 O ATOM 113 CB ARG 9 -6.453 -4.173 16.113 1.00 -0.00 C ATOM 114 1HB ARG 9 -5.975 -3.742 15.234 1.00 0.03 H ATOM 115 2HB ARG 9 -5.947 -3.779 16.995 1.00 0.03 H ATOM 116 CG ARG 9 -6.258 -5.698 16.079 1.00 0.04 C ATOM 117 1HG ARG 9 -5.821 -6.028 17.021 1.00 0.03 H ATOM 118 2HG ARG 9 -7.220 -6.184 15.950 1.00 0.03 H ATOM 119 CD ARG 9 -5.371 -6.133 14.924 1.00 0.05 C ATOM 120 1HD ARG 9 -5.356 -7.223 14.882 1.00 0.07 H ATOM 121 2HD ARG 9 -5.814 -5.767 14.000 1.00 0.07 H ATOM 122 NE ARG 9 -3.993 -5.629 15.028 1.00 -0.53 N ATOM 123 HE ARG 9 -3.771 -5.118 15.862 1.00 0.35 H ATOM 124 CZ ARG 9 -3.041 -5.781 14.117 1.00 0.81 C ATOM 125 NH1 ARG 9 -1.864 -5.276 14.364 1.00 -0.86 N ATOM 126 1HH1 ARG 9 -1.695 -4.783 15.221 1.00 0.32 H ATOM 127 2HH1 ARG 9 -1.130 -5.383 13.688 1.00 0.32 H ATOM 128 NH2 ARG 9 -3.196 -6.397 12.977 1.00 -0.86 N ATOM 129 1HH2 ARG 9 -4.119 -6.777 12.715 1.00 0.32 H ATOM 130 2HH2 ARG 9 -2.443 -6.499 12.332 1.00 0.32 H ATOM 131 N GLY 10 -9.815 -4.821 15.138 1.00 -0.42 N ATOM 132 H GLY 10 -10.345 -4.568 15.964 1.00 0.27 H ATOM 133 CA GLY 10 -10.325 -5.921 14.323 1.00 -0.03 C ATOM 134 1HA GLY 10 -9.511 -6.641 14.222 1.00 0.07 H ATOM 135 2HA GLY 10 -11.114 -6.413 14.888 1.00 0.07 H ATOM 136 C GLY 10 -10.861 -5.689 12.920 1.00 0.60 C ATOM 137 O GLY 10 -11.776 -6.382 12.485 1.00 -0.57 O ATOM 138 N SER 11 -10.295 -4.731 12.205 1.00 -0.42 N ATOM 139 H SER 11 -9.585 -4.150 12.641 1.00 0.27 H ATOM 140 CA SER 11 -10.506 -4.562 10.772 1.00 -0.03 C ATOM 141 HA SER 11 -11.390 -5.104 10.439 1.00 0.08 H ATOM 142 C SER 11 -9.280 -5.120 10.049 1.00 0.60 C ATOM 143 O SER 11 -9.278 -5.254 8.823 1.00 -0.57 O ATOM 144 CB SER 11 -10.655 -3.077 10.460 1.00 0.21 C ATOM 145 1HB SER 11 -10.724 -2.937 9.380 1.00 0.04 H ATOM 146 2HB SER 11 -11.566 -2.707 10.930 1.00 0.04 H ATOM 147 OG SER 11 -9.548 -2.355 10.978 1.00 -0.65 O ATOM 148 HG SER 11 -9.584 -1.456 10.644 1.00 0.43 H ATOM 149 N ILE 12 -8.251 -5.421 10.833 1.00 -0.42 N ATOM 150 H ILE 12 -8.352 -5.333 11.838 1.00 0.27 H ATOM 151 CA ILE 12 -6.969 -5.980 10.408 1.00 -0.06 C ATOM 152 HA ILE 12 -7.097 -6.605 9.526 1.00 0.09 H ATOM 153 C ILE 12 -6.595 -6.860 11.597 1.00 0.60 C ATOM 154 O ILE 12 -5.458 -7.374 11.673 1.00 -0.57 O ATOM 155 OXT ILE 12 -7.449 -6.938 12.504 1.00 -0.57 O ATOM 156 CB ILE 12 -5.876 -4.891 10.156 1.00 0.13 C ATOM 157 HB ILE 12 -4.927 -5.406 9.998 1.00 0.02 H ATOM 158 CG1 ILE 12 -5.730 -3.954 11.375 1.00 -0.04 C ATOM 159 1HG1 ILE 12 -6.622 -3.332 11.449 1.00 0.02 H ATOM 160 2HG1 ILE 12 -5.670 -4.558 12.275 1.00 0.02 H ATOM 161 CG2 ILE 12 -6.206 -4.086 8.878 1.00 -0.32 C ATOM 162 1HG2 ILE 12 -6.400 -4.775 8.054 1.00 0.09 H ATOM 163 2HG2 ILE 12 -7.103 -3.484 9.037 1.00 0.09 H ATOM 164 3HG2 ILE 12 -5.375 -3.438 8.608 1.00 0.09 H ATOM 165 CD1 ILE 12 -4.502 -3.037 11.355 1.00 -0.07 C ATOM 166 1HD1 ILE 12 -4.455 -2.485 12.294 1.00 0.02 H ATOM 167 2HD1 ILE 12 -3.597 -3.633 11.241 1.00 0.02 H ATOM 168 3HD1 ILE 12 -4.578 -2.326 10.532 1.00 0.02 H TER 169 ILE 12 END
SEQUENCE	GLLSGTSVRGSI
HELICITY	0.00	INSTAB. INDEX	-4.98	FLEXIBILITY	19.41
a HYD. MOM.	5.66	b HYD. MOM.	3.28	c HYD. MOM	0.82
a MEAN HYD. MOM.	0.47	b MEAN HYD. MOM.	0.27	c MEAN HYD. MOM.	0.07
CHARGE pH5	1.00	CHARGE pH7	1.00	CHARGE pH9	0.83
Δ CHARGE pH5-pH9	0.17	ISOELECTRIC POINT	9.75	BOMAN INDEX	0.51
ΔG	3	CPP	-0,57	MLP	-5,31
MOLECULAR VOLUME		POLARITY
MIC E. coli	20	MIC P. aeruginosa		MIC S. typhimurium
MIC S. aureus	10	MIC M. luteus		MIC B. subtilis	10
MIC C. albicans	5	OTHER
MIC OTHER gram+
MIC OTHER gram-
PHYLUM	Chordata	CLASS	Amphibia	ORDER	Anura
FAMILY	Ranidae	GENUS	Odorrana	SPECIES	Odorrana grahami
DATE	2007
TITLE PAPER	Anti-infection peptidomics of amphibian skin